PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G361700.4
Common NameB456_007G361700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 288aa    MW: 31442.4 Da    PI: 6.8925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G361700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09199246455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gorai.007G361700.4 199 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 246
                         8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-15193264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-8193250No hitNo description
Gene3DG3DSA:4.10.280.108.1E-15195263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6199246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESNAGTLET RSNKTALERE EVAALESLQF TDEIHCLMSA PATDNASSFT ALLELPAPQA  60
VQLIHSPDSA KLIAAPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKSDSPEATS  120
NISSANLQKA VKSEPAETDS SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTVKESSDD  180
TEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN  240
HVQSLQRQVE FLSMRLAAVN PRVDFNFDSV FTAEVSIRHL FSYLLSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19170.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434992.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI11e-80BH060_ARATH; Transcription factor bHLH60
SwissprotQ8VZ028e-81BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0D2PJV70.0A0A0D2PJV7_G
STRINGGLYMA03G29710.17e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-89bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]